Use of qPCR to Evaluate Efficiency of the Bulky DNA Damage Removal in Extracts of Mammalian Cells with Different Maximum Lifespan

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Aleksei A. Popov¹, Vladimir A. Shamanin², Irina O. Petruseva¹, Aleksei N. Evdokimov¹, Olga I. Lavrik^1,3,a*

¹Institute of Chemical Biology and Fundamental Medicine, Siberian Branch Russian Academy of Sciences, 630090 Novosibirsk, Russia

²LLC “BioLink”, 630090 Novosibirsk, Russia

³Novosibirsk National Research State University, 630090 Novosibirsk, Russia

^* To whom correspondence should be addressed.

Received: March 1, 2024; Revised: April 18, 2024; Accepted: April 28, 2024

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Proteins of nucleotide excision repair system (NER) are responsible for detecting and removing a wide range of bulky DNA damages, thereby contributing significantly to the genome stability maintenance within mammalian cells. Evaluation of NER functional status in the cells is important for identifying pathological changes in the body and assessing effectiveness of chemotherapy. The following method, described herein, has been developed for better assessment of bulky DNA damages removal in vitro, based on qPCR. Using the developed method, NER activity was compared for the extracts of the cells from two mammals with different lifespans: a long-lived naked mole-rat (Heterocephalus glaber) and a short-lived mouse (Mus musculus). Proteins of the H. glaber cell extract have been shown to be 1.5 times more effective at removing bulky damage from the model DNA substrate than the proteins of the M. musculus cell extract. These results are consistent with the experimental data previously obtained. The presented method could be applied not only in fundamental studies of DNA repair in mammalian cells, but also in clinical practice.

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KEY WORDS: DNA repair, PCR, longevity

DOI: 10.1134/S0006297924070022

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