ISSN 0006-2979, Biochemistry (Moscow), 2026, Vol. 91, No. 6, pp. 992-1005 © Pleiades Publishing, Ltd., 2026.
992
Development of Metabolic Stress
in Vascular Organoids under Normal Conditions
and with AD/PD-Associated Genetic Backgrounds
Anna V. Blagova
1,a
*
#
, Elizaveta S. Perepelitsa
1#
, Anakha Satish
1
,
Dmitry A. Lifanov
1,2
, Victoria I. Zhdankina
1
, Anna A. Kopylova
2
,
Polina V. Guk
1
, Alla B. Salmina
1
, and Sergey N. Illarioshkin
1
1
Federal State Budgetary Scientific Institution “Russian Center of Neurology and Neurosciences”,
125367 Moscow, Russia
2
Laboratory of Cell Technologies and Tissue Engineering,
Research and Education Center “Soft Matter and Fluid Physics”,
Bauman Moscow State Technical University, 105005 Moscow, Russia
a
e-mail: annablagova2000@mail.ru
Received January 30, 2026
Revised June 1, 2026
Accepted June 2, 2026
AbstractVascular organoids derived from human induced pluripotent stem cells (iPSCs) are promising
models for studying vascular pathology, including neurodegenerative diseases. In this study, we investigated
signs of mitochondrial dysfunction in the vascular organoids derived from the iPSCs of a healthy donor,
as well as patients with Alzheimers disease (AD) and Parkinson’s disease (PD). In the conditioned medium
of vascular organoids from the PD patient-derived cells, but not from the AD patient-derived cells, a trend
toward a disrupted NAD
+
/NADH balance was observed, accompanied by the reduced expression of the
connexin  43 (Cx43) protein. A sign of metabolic vulnerability of endothelial cells in the vascular organoids
from the PD patient-derived cells, but not from normal or AD patient-derived organoids, manifested as
reduced expression of c-Myc was observed. Changes in the membrane potential were detected in the vas-
cular organoids from the AD and PD patient-derived, as well as increase in the mitochondrial superoxide
anion production were observed, which may indicate development of oxidative stress in the microvessel
cells during neurodegeneration.
DOI: 10.1134/S0006297926600286
Keywords: vascular organoids, mitochondrial dysfunction, metabolic stress, Alzheimers disease, Parkinson’s
disease, iPSC
* To whom correspondence should be addressed.
# These authors contributed equally to this study.
INTRODUCTION
Traditionally, animal and cell models have been
used to study pathogenesis of neurodegenerative
diseases and vascular aging. However, animal mod-
els do not fully represent the processes occurring in
the human body, and classical two-dimensional cell
models are limited in replicating tissue architecture
and intercellular interactions. Therefore, the tech-
nology of organoids derived from human induced
pluripotent stem cells (iPSCs) is actively developing,
allowing creation of the patient-specific three-dimen-
sional models for detailed study of pathogenic pro-
cesses. Unlike the classical 2D monolayers, transition
to three-dimensional cultures allows recreating the
tissue microenvironment and many of the physico-
chemical effects occurring in the tissues of a living
organism: gradients and flows of oxygen, carbon
dioxide, metabolites, and pH  [1]. Additionally, when
growing organoids from iPSCs de  novo, it is possible
to obtain a specific repertoire of cells corresponding
to a particular tissue of interest, as well as accurately
model pathological processes characteristic of it  [2].
METABOLIC STRESS IN VASCULAR ORGANOIDS 993
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To model pathological processes, iPSCs from both
healthy donors (which can be genetically modified
in  vitro, such as deletions or nonsense mutations that
may cause pathology) and patients with existing ge-
netic pathology can be used  [3, 4].
Despite the large number of studies performed
using brain  [5], intestinal  [6], and heart  [7] organoids,
protocols for obtaining vascular organoids have only
recently begun to emerge [8, 9]. During production of
vascular organoids, the iPSC spheroids (so-called em-
bryoid bodies) are sequentially differentiated in the
mesodermal and vascular directions and then embed-
ded in a gel matrix to induce sprouting – growth and
branching of vessel-like processes  [8]. Thus, vascular
organoids allow accurate modeling of vasculogenesis
and angiogenesis processes  [10]. The ability of cells
to self-organize enables them to form complex spa-
tial networks, including endothelial layer and other
components of the vascular wall, which ensures close
approximation of the architecture and intercellular
interactions characteristic of native vessels  [11,  12].
Vascular organoids are also of interest in solving
the problem of vascularizing organoids that model
other tissues, as their fusion could form a vascular
network that supplies deeper layers of the organoid
cells with oxygen and nutrients, similar to in  vivo
conditions  [13]. In addition, vascular organoids can
be considered as an independent model of vascular
pathology in various diseases, such as diabetes  [14].
However, vascular organoids have not previously
been used to study vascular pathology in neurode-
generative diseases such as Alzheimer’s disease (AD)
and Parkinson’s disease (PD).
It is known that vascular disorders play a crit-
ical role in the pathogenesis of AD: they not only
exacerbate classical pathogenic processes associated
with accumulation and spread of aberrant proteins
but can also be an early cause of neurodegeneration
due to excessive neovascularization, non-productive
angiogenesis, formation of a pathologically permeable
blood–brain barrier (BBB), and disorders in the neu-
rovascular unit of the brain  [15,  16]. In PD, vascular
changes also have a significant impact: pathological
activation of pericytes, reduced capillary network
density, endothelial dysfunction, and impaired angio-
genesis lead to impaired microcirculation and met-
abolic disorders in the brain  [17]. Overall, studying
vascular aspects of neurodegeneration is a key area
for understanding the pathogenesis of AD and PD, as
well as cerebrovascular aging in general.
Mitochondrial dysfunction is a key mechanism of
neurodegeneration in AD and PD. Currently, data on
mitochondrial dysfunction in vascular organoids are
limited, although there are data obtained using 2D
cultures of endothelium and cerebral organoids. For
example, in the brain microvascular endothelial cells
derived from iPSCs, the amyloid-β peptides (Aβ40
and Aβ42) and mutations in the PSEN1, PSEN2 genes
(characteristic of AD) and LRRK2 G2019S gene (char-
acteristic of PD) cause pronounced mitochondrial dys-
function, reduced membrane potential, depletion of
glycolytic reserve, accumulation of aberrant proteins,
increased oxidative stress, and reduced cell viability
[18-21]. Observations in cerebral organoids modeling
AD show decrease in the mitochondrial membrane
potential, increased production of mitochondrial su-
peroxide anion (O
2
), and disruption of redox ho-
meostasis, indicating increased oxidative stress in
the neurons  [22]. Mitochondrial metabolic disorders
are accompanied by imbalance in NAD
+
/NADH ratio,
reflecting deficiency in the energy metabolism and
reduced efficiency of the electron transport chain,
as demonstrated in the study by Hong et al. (2024)
devoted to organoids modeling another neurodegen-
erative pathology, Alpers syndrome  [23]. In the case
of endothelial cells, an imbalance in the NAD
+
/NADH
ratio may indicate cell aging, as extracellular NAD
+
is
an important signaling molecule, and its derivatives
are substrates for replenishing the NAD
+
pool in the
cell  [24]. In particular, disruption of the extracellu-
lar NAD
+
/NADH balance may occur due to activity of
the connexin Cx43, which can act as a transporter of
NAD
+
and regulate activity of the NAD
+
-dependent en-
zyme PARP1  [25], as well as due to activity of CD38,
an enzyme that hydrolyzes NAD
+
[26].
Despite the advantages of the iPSC-based models
(including preservation of the authentic genetic con-
text of the donor), it is necessary to note some lim-
itations associated with the use of such models and
cells differentiated from iPSCs to study metabolism.
For example, the very procedure of reprogramming
of somatic cells into iPSCs is accompanied by mito-
chondrial DNA damage [27] and oxidative stress [28],
which should be considered as an additional factor
affecting functional competence of iPSCs and organ-
oids derived from them. However, it has been noted
that iPSCs retain key features of mitochondrial meta-
bolic disorders characteristic of the donor of somatic
cells, for example, during aging  [29], which justifies
relevance of the metabolic models based on iPSCs.
In particular, the literature data confirm that mi-
tochondrial metabolic disorders, associated reductive
or oxidative stress, and energy deficiency significant-
ly affect cell survival and their sensitivity to patho-
logical protein aggregates. This emphasizes the prom-
ise of studying mitochondrial dysfunction in vascular
organoids for more realistic modeling of the mecha-
nisms of neurodegeneration in AD and PD.
The aim of this study was to identify signs of
mitochondrial dysfunction and metabolic stress in the
vascular organoids derived from iPSCs of a healthy
donor and patients with AD and PD by measuring
BLAGOVA et al.994
BIOCHEMISTRY (MOSCOW) Vol. 91 No. 6 2026
NAD
+
/NADH levels, determining mitochondrial poten-
tial, and studying the level of reactive oxygen species
(ROS) in mitochondria.
MATERIALS AND METHODS
iPSC cultivation. In this work, we used iPSCs
lines from a healthy donor IPSRG2L (HD), a pa-
tient with Alzheimers disease with the V717I mu-
tation in the gene encoding amyloid precursor pro-
tein APP Alz-9L  (AD), and a patient with Parkinson’s
disease with mutation in the gene encoding LRRK2
IPSPDL2.6S (PD) (obtained at the Federal State Bud-
getary Scientific Institution “Russian Center of Neu-
rology and Neurosciences”, as well as kindly provided
by the Federal State Budgetary Scientific Institution
ICiG  SB  RAS). Previously, expression of pluripotency
markers, normal karyotype, and ability to form de-
rivatives of the three germ layers were confirmed in
these lines. iPSCs were cultured in a mixture of a Hy-
brid-S-8 medium with alanyl-glutamine (PanEco, Rus-
sia) and mTeSR 1 (StemCell Technologies, Canada) at
a 4  :  1 ratio with addition of penicillin-streptomycin
(50  U/mL, 50  µg/mL; PanEco) on a 1%  Matrigel matrix
(ABW, China). Cell lines were cultured at 37°C in an
atmosphere of 5%  CO
2
with daily medium changes.
Upon reaching 80-90% confluency, cells were pas-
saged using a 0.05% trypsin-EDTA solution (PanEco).
After passaging and thawing, 5  µM Y-27632 (StemCell
Technologies) was added to the medium.
To obtain spheroids from iPSCs, microwell
stamps manufactured using MSLA 3D printing tech-
nology from Anycubic Basic Translucent Green pho-
topolymer resin [30] and provided by the Institute
of Physics and Materials Science, Ural Branch of the
Russian Academy of Sciences, were used. To create
microwells, 2%  agarose (Helicon, Russia) diluted in
deionized water and boiled twice was used. Agarose
was poured into Petri dishes under a laminar hood,
and a microwell stamp was placed in the still hot
agarose. After the agarose solidified, the stamp was
slowly lifted, and the microwells were soaked in iPSC
culture medium for at least 24  h to avoid osmotic
shock to the cells. To form spheroids, iPSC suspension
was added at a rate of 3000 cells per microwell with
addition of 50  µM Y-27632. Medium replacement was
carried out 72  h after seeding the microwells.
To obtain vascular organoids, a modified pro-
tocol [8, 31] was used. After 5 days from the start
of spheroid formation, differentiation in the me-
sodermal direction was initiated in a mixture of
DMEM/F-12 (PanEco) and Neurobasal (PanEco) media
at a 1  :  1 ratio with addition of penicillin-streptomy-
cin (50 U/mL, 50  µg/mL), 2  mM L-glutamine (Service-
Bio, China), 50×  NeuroMax (PanEco), 100×  N-2 (Pan-
Eco), 12  µM CHIR99021 (Miltenyi Biotec, Germany),
and 30  ng/mL BMP-4 (ABclonal, China). On day  3,
differentiation in the vascular direction was induced
using a mixture of DMEM/F-12 and Neurobasal me-
dia at a 1  :  1 ratio with addition of penicillin-strep-
tomycin (50  U/mL, 50  µg/mL), 2 mM L-glutamine
(ServiceBio), 50× NeuroMax (PanEco), 100×  N-2 (Pan-
Eco), 100  ng/mL VEGF-A (sci-store, Russia), and 2 µM
forskolin (Miltenyi Biotec). Spheroids were incubated
for 48  h.
To obtain vascular networks, a mixture of a
GelNest Matrix (NEST, China) and 2.6  mg/mL type  I
collagen (Biolot, Russia) at a 1  :  1 ratio was used.
Before mixing with Matrigel, the collagen solution
was brought to neutral pH by adding 5  M  NaOH.
The required number of wells of a 6-well ultra-low
adhesion plate (SPL LifeSciences, South Korea) were
coated with 1  mL of cold matrix mixture. For po-
lymerization, the matrix was incubated at 37°C for
2-16  h. Spheroids were collected and resuspended in
1  mL of a cold matrix mixture, which was added to
the previously prepared 6-well plate. For polymeriza-
tion, the matrix was incubated at 37°C for 2  h, after
which a vascular differentiation medium was added
to the wells: RPMI-1640 (PanEco), penicillin-strepto-
mycin (50  U/mL, 50  µg/mL), 2  mM L-glutamine (Ser-
viceBio), 50× insulin-transferrin-selenium (PanEco),
15%  FBS (BioWest, France), 100  ng/mL VEGF-A (sci-
store), 100  ng/mL FGF-2 (sci-store). The medium was
replaced after 3  days, then every 2  days. The result-
ing vascular networks were cultured in the matrix
for 2 weeks.
Individual vascular networks were then extract-
ed from the matrix using sterile Pasteur pipettes
(MiniMed, Russia) or wide-bore tips (GenFollower,
China), transferred to 96-well round-bottom plates
(SPL LifeSciences), and cultured for 4-5 days until the
organoids rounded.
Immunocytochemistry. Vascular organoids
were fixed in 4% paraformaldehyde (Servicebio) and
washed three times with PBS (10min each). Non-spe-
cific binding was blocked with a 1%  BSA solution
(ABclonal) in PBS with incubation for 2  h at 37°C,
followed by three PBS washes for 10  min each. For
double staining for CD31 and CD34, primary mouse
antibodies against CD31 (1  :  100, 14-0319-82, Invitro-
gen, USA) and rabbit antibodies against CD34 (1  :  100,
PAB959Mu01, Cloud-Clone Corp., China) were used
with incubation for 16  h at 4°C, followed by wash-
ing with 0.01% Triton X-100 in PBS three times for
10  min each. Goat anti-rabbit IgG antibodies conju-
gated with FITC fluorophore (1  :  500, AS011, ABclonal,
China) and goat anti-mouse IgG antibodies conjugat-
ed with ABflo™ 594 (1  :  500, AS054, ABclonal, China)
were used as secondary antibodies with incubation
for 3  h at room temperature. Washing was also
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BIOCHEMISTRY (MOSCOW) Vol. 91 No. 6 2026
performed with 0.01% Triton X-100 in PBS three times
for 10 min each. Samples were mounted in a Lumi-
Mount mounting medium with DAPI (Lumiprobe,
Russia) and visualized using an Olympus FV-3000
confocal microscope.
Measurement of mitochondrial membrane
potential. To measure mitochondrial membrane po-
tential in organoids, tetramethylrhodamine ethyl es-
ter perchlorate (TMRE, Abcam) was used. A 500  nM
TMRE solution in PBS was added to the wells of
a 96-well plate with organoids and incubated for
30  min at 37°C. The wells were washed three times
with PBS. Fluorescence intensity was assessed using
a BioTek Synergy H1 Multimode Reader microplate
reader (Agilent) at a wavelength of 549/575 nm and
visualized using the Evos M7000 imaging system
(Thermo Fisher Scientific, USA).
To assess membrane potential, a JC-1 dye (Lu-
miprobe, Russia) was also used. A 200  µM JC-1 solu-
tion in DMSO was added to the wells of a 96-well plate
with organoids and incubated for 30 min at 37°C.
The wells were next washed with PBS. Fluorescence
intensity was assessed using a BioTek Synergy H1
Multimode Reader microplate reader at wavelengths
of 510/530  nm and 560/590  nm and visualized using
the Evos M7000 imaging system. Duration of organoid
staining with fluorescent probes was chosen based on
the manufacturers recommendations.
FCCP was used as a positive control for complete
mitochondrial depolarization. Samples were incubat-
ed with 10  µM FCCP for 30  min at 37°C. The obtained
fluorescence values were normalized relative to the
signal recorded in the presence of FCCP, which al-
lowed accounting for non-specific contributions as-
sociated with variability in the number of organoids
and intensity of the dye accumulation, ensuring cor-
rect comparison between experimental groups using
formulas (1) and (2):
ΔΨ
TMRE
= (F
Sample
– F
FCCP
)/F
Control
, (1)
ΔΨ
JC-1
= F
Sample
/F
FCCP
, (2)
where ΔΨ is relative indicator of mitochondrial mem-
brane potential, F
Sample
is fluorescence intensity of the
studied sample, F
FCCP
is fluorescence intensity of the
sample after FCCP treatment, and F
Control
is average
fluorescence intensity in the control group.
Measurement of mitochondrial superoxide
production. To measure the level of mitochondrial
superoxide in organoids, a fluorescent probe Mito-
SOX Green (Invitrogen, Thermo Fisher Scientific) was
used. A 1  µM MitoSOX Green solution in Locke’s buf-
fer (pH  7.8) was added to the wells and incubated for
30  min at 37°C. The wells were washed three times
with a warm Locke’s buffer (pH  7.8). Fluorescence
intensity was assessed using a BioTek Synergy H1
Multimode Reader microplate reader at a wavelength
of 488/510  nm and visualized using an Evos M7000
imaging system.
Determination of NADH and NAD
+
levels.
Levels of NADH in the conditioned medium were de-
termined using a NAD
+
/NADH Colorimetric Assay Kit
(WST-8) (Elabscience, China; E-BC-K804-M) according
to the manufacturers recommendations.
RNA extraction. For RNA extraction, 10-30 organ-
oids from each line were pooled per biological rep-
licate. Total RNA was extracted using an ExtractRNA
reagent (Evrogen, Russia) according to the manufac-
turers recommendations. Concentration of extracted
RNA was measured using a Nano-500 spectrophotom-
eter (Allsheng, China).
Reverse transcription. 1  µg of RNA was used as
a template for cDNA synthesis using a Magnus re-
verse transcriptase (Evrogen) according to the manu-
facturers recommendations.
Quantitative real-time PCR (qPCR-RT). For gene
expression analysis using qPCR-RT, a ready-made 5X
qPCRmix-HS mixture (Evrogen) was used according
to the manufacturers recommendations. For the re-
action, 20× dilutions of cDNA were used. The primers
and fluorescent probes used are presented in Table  1.
The reaction mixture (20  µL) included 1  µL of for-
ward and reverse primers (10  µM), 0.25  µL of probe
(10  µM), 4  µL of 5X qPCRmix-HS, and 2  µL of cDNA
(20×); the volume was adjusted to 20  µL with a nu-
clease-free deionized water (Evrogen). Reaction con-
ditions: 95°C for 5  min; (95°C for 10  s; 60°C for 20  s;
72°C for 15  s), 45 cycles. qPCR-RT was performed with
a Rotor-Gene Q amplifier (Qiagen, Germany). To cal-
culate gene expression levels based on Ct values, the
Pfaffl method [21] was used. To calculate relative ex-
pression of the genes of interest, expression level of
the gene was normalized to the expression level of
the reference gene GAPDH.
Western blotting. Protein was extracted from
10-15 organoids using a RIPA buffer (ServiceBio)
with added protease inhibitors (Sigma-Aldrich, USA).
A 10% gel was used for protein separation. Protein
loading was 35  µg per lane. Electrophoresis was car-
ried out at 120  V until the dye front was reached.
Protein transfer to a nitrocellulose membrane was
performed for 1  h at a constant current of 200  mA.
After transfer, the membranes were blocked in a
5% bovine serum albumin solution for 30  min at
room temperature. The membranes were next in-
cubated with primary antibodies: Cx43 (AF0137,
Affinity Biosciences, USA; 1  :  10,000) and beta-Actin
(GB15001-1, ServiceBio; 1  :  1500) at 4°C overnight.
After this, the membranes were incubated with cor-
responding secondary antibodies: Goat Anti-Mouse
IgG 520 (12005866, Bio-Rad, USA; 1  :  2500) and
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Table 1. Primer and fluorescent probe sequences for qPCR-RT
Name Sequence (5′-3′)
GAPDH Fw AGAAGTATGACAACAGCCTCA
GAPDH Rv CATGAGTCCTTCCACGATAC
GAPDH Probe /FAM/-AGATCATCAGCAATGCCTCCTGCAC-/BHQ2/
MYC Fw CGTCCTCGGATTCTCTG
MYC Rv ACATCGATTTCTTCCTCATCTT
MYC Probe /R6G/-TTGTTCCTCCTCAGAGTCGCTGCT-/BHQ1/
Goat Anti-Rabbit IgG 700 (12004161, Bio-Rad; 1  :  2500)
for 1  h at room temperature. Images were obtained
using a Chemidoc-MP fluorescent imager (Bio-Rad).
Fluorescence intensity was determined using the Im-
ageLab software (Bio-Rad). Expression levels of target
proteins in cell lines were normalized to the expres-
sion of beta-actin protein using ImageLab software.
Statistical analysis. Data analysis and visual-
ization were performed using GraphPad Prism  10.
Descriptive statistics data are presented as arithme-
tic means and standard deviation (SD). Normality
of distribution was assessed using the Shapiro–Wilk
test. Group comparisons were performed using one-
way ANOVA with Sidak’s post-hoc test for normally
distributed data, and the Kruskal–Wallis method with
Dunn’s post-hoc test for non-normally distributed
data. Differences were considered statistically signif-
icant at p <  0.05.
RESULTS
Obtaining vascular organoids. Vascular organ-
oids were obtained from iPSCs  [31]. For phenotyping,
antibodies against endothelial cell markers CD31 and
CD34 were used. The presented images (Fig.  1) show
the levels of expression of these markers, confirming
their endothelial nature of the cells and successful
formation of vascular structures.
Pyridine nucleotide pool is disrupted in the
vascular organoids produced from the cells de-
rived from PD patients. No significant differences
in the NAD
+
and NADH levels were found in the
conditioned medium of vascular organoids generated
from different cell lines (Fig. 2, a and b). However,
in the vascular organoids produced from the PD pa-
tient-derived cells, we observed a trend toward de-
crease in the NAD
+
/NADH ratio, while in the vascular
organoids generated from the cell derived from AD
patients, we observed a trend toward increase in the
NAD
+
/NADH ratio (Fig.2c), indicating possible disrup-
tions in the processes associated with production and
utilization of pyridine nucleotides (glycolysis, oxida-
tive phosphorylation, activity of NAD
+
-converting en-
zymes, etc.).
Change in the NAD
+
/NADH ratio in the condi-
tioned medium could be associated with the change
in expression of the Cx43 hemichannels, which could
regulate NAD
+
transport across the membrane. In this
regard, we assessed the level of expression of Cx43 in
the lysate of the vascular organoids using the West-
ern blotting method and observed a trend toward in-
creased expression of Cx43 in the vascular organoids
from the cells derived from AD patient compared to
the normal vascular organoids from the cells derived
from a healthy donor (Fig.  3). This may indicate exis-
tence of a Cx43-mediated mechanism of NAD
+
/NADH
imbalance in the vascular organoids from the cells
derived from AD patients.
c-Myc expression is reduced in the vascular or-
ganoids produced from the cells derived from the
PD patient. Myc protein is a key regulator of a num-
ber of physiological processes in the cell, including mi-
tochondrial biogenesis and metabolic activity. In this
regard, we analyzed expression level of the MYC gene
in the vascular organoids using the qPCR-RT method.
We revealed a statistically significant decrease in the
expression of the MYC gene in the vascular organoids
produced from the PD patient-derived cells compared
to the organoids produced from the cells of a healthy
donor and AD patients (Fig.  4), which may be a sign
of metabolic vulnerability of endothelial cells in the
organoids based on the cells from the PD patient.
Mitochondrial potential is disrupted in the
vascular organoids derived from iPSCs of AD and
PD patients. Measurement of mitochondrial potential
in the vascular organoids was performed using the
potential-sensitive probes TMRE and JC-1. TMRE can
accumulate in active mitochondria in a potential-de-
pendent manner, resulting in fluorescence in the red
channel. Although JC-1 also selectively accumulates
in mitochondria in a potential-dependent manner,
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BIOCHEMISTRY (MOSCOW) Vol. 91 No. 6 2026
Fig. 1. Immunocytofluorescent images of a vascular organoid derived from iPSCs of a healthy donor. Organoids were fixed
with 4% paraformaldehyde and stained with antibodies against endothelial markers CD31 (red) and CD34 (green); DAPI
(blue). Images were obtained using an Olympus FV3000 confocal microscope. Co-expression of CD31 and CD34 markers in
the cells of the vascular organoid on day 30 of cultivation is shown.
its fluorescence depends on the mitochondrial mem-
brane potential: in the depolarized membranes, JC-1
exists as a monomer and emits fluorescence in the
green channel, while in the hyperpolarized mem-
branes, it is present as J-aggregates, producing a fluo-
rescent signal in the red channel. Therefore, the ratio
between the red and green fluorescence (R/G) could
indicate predominance of the “healthy” or depolar-
ized mitochondria in the sample.
When assessing the mitochondrial membrane
potential using TMRE (Fig.  5, a, b), no significant
differences were found between the integral fluores-
cence intensity signals of the probes in the vascular
organoids. At the same time, analysis of the ratio of
red and green fluorescence of JC-1 (Fig.  6) showed
decrease in the R/G in the vascular organoids de-
rived from the AD and PD patients, which may indi-
cate early or moderate changes in ΔΨm not detected
BLAGOVA et al.998
BIOCHEMISTRY (MOSCOW) Vol. 91 No. 6 2026
Fig. 2. Levels of NAD
+
(a), NADH (b), and the ratio of NAD
+
/NADH levels (c) in the conditioned medium of vascular organ-
oids derived from iPSCs of a healthy donor (HD) and patients with Alzheimer’s disease (AD) and Parkinson’s disease (PD).
Data are presented as mean values (n = 3).
Fig. 3. a and b)Expression of beta-actin (a) and Cx43 (b) proteins in the vascular organoids derived from iPSCs of a healthy
donor (HD) and patients with Alzheimer’s disease (AD) and Parkinson’s disease (PD), determined by Western blotting.
c) Level of Cx43 expression relative to beta-actin. Data are presented as a mean ±SD (n = 3).
by the TMRE method. Discrepancy between the re-
sults of the two probes may be due to the different
sensitivities and dependencies of TMRE fluorescence
on mitochondrial mass and dye accumulation.
Superoxide anion level is elevated in the vas-
cular organoids produced from iPSCs derived from
AD and PD patients. To determine the level of ROS in
the vascular organoids, the fluorescent probe MitoSOX
Green, which selectively accumulates in mitochondria
and is oxidized by superoxide anion to produce a flu-
orescent signal, was used. In the vascular organoids
produced from the iPSCs derived from AD and PD
patients, we observed a statistically significant in-
crease in the superoxide anion levels compared to the
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BIOCHEMISTRY (MOSCOW) Vol. 91 No. 6 2026
vascular organoids produced from the iPSC derived
from the healthy donor (Fig. 5, a and c).
DISCUSSION
Cerebrovascular pathology is a significant com-
ponent of AD and PD pathogenesis [16, 32]. Vascular
damage in the brain in neurodegenerative diseases
is associated with structural disorders of endotheli-
um, angiogenesis defects, dissemination of aberrant
proteins, chronic hypoperfusion, and impaired BBB
permeability, leading to the development of neu-
roinflammation [33-35]. Currently, it is believed that
for the neurodegenerative diseases, especially AD,
non-productive angiogenesis against the background
of hypervascularization is characteristic, leading to
formation of a large number of functionally and
structurally defective microvessels in the brain  [36,
37]. This phenomenon is associated with vascular ag-
ing, which could develop against the background of
cellular senescence, as well as oxidative stress and
mitochondrial dysfunction  [38]. The consequences of
vascular aging extend to other cells of the neurovas-
cular unit, damaging neurons, astrocytes, and microg-
lia, thereby exacerbating neuroinflammation and pre-
venting normal cell functioning [39, 40].
Mitochondrial dysfunction is considered the basis
of vascular aging [41-43]. It is known that endothelial
cells of the brain capillaries have a greater number
of mitochondria compared to the endothelium of pe-
ripheral vessels  [44]. This indicates high energy de-
mands of endothelial cells in the brain, which is es-
Fig. 4. Expression level of the MYC gene in the vascular or-
ganoids derived from iPSCs of a healthy donor (HD) and pa-
tients with Alzheimer’s disease (AD) and Parkinson’s disease
(PD), determined by qPCR-RT. Expression level of the MYC
gene is normalized to the expression of the reference gene
GAPDH. Data are presented as a mean ±SD, n = 3, *p < 0.05.
Fig. 5. a) Staining of mitochondria in vascular organoids derived from iPSCs of a healthy donor (HD) and patients with
Alzheimer’s disease (AD) and Parkinson’s disease (PD) using the potential-sensitive probe TMRE (red) and the superoxide-sen-
sitive probe MitoSOX Green (green). Magnification 10×. a,b)Relative intensity of TMRE (b) and MitoSOX (c) fluorescence in
vascular organoids. Data are presented as a mean ± SD. Each point on the graphs corresponds to the signal value measured
in an individual well of the microplate, **** p < 0.0001.
BLAGOVA et al.1000
BIOCHEMISTRY (MOSCOW) Vol. 91 No. 6 2026
Fig. 6. a) Staining of mitochondria in vascular organoids derived from iPSCs of a healthy donor (HD) and patients
with Alzheimer’s disease (AD) and Parkinson’s disease (PD) using the potential-sensitive probe JC-1 (JC-1 dimers – red;
JC-1 monomers (depolarized mitochondria) – green), magnification 10×. band c) Relative intensity of JC-1 fluorescence in
vascular organoids measured in (b) the red channel and (c) the green channel. d)Ratio of fluorescence in the red channel
to fluorescence in the green channel (ratio of the fluorescent signal of “healthy” mitochondria to the fluorescent signal of
depolarized mitochondria). Data are presented as a mean ± SD. Each point on the graphs corresponds to the signal value
measured in an individual well of the microplate, ** p < 0.01, *** p < 0.001.
pecially relevant for the effective functioning of the
neurovascular unit and the BBB  [45]. Experimentally,
it has been shown that pharmacological suppression
of mitochondrial activity in the brain microvascular
endothelial cells leads to the destruction of tight junc-
tions between them and, as a result, increased BBB
permeability  [46]. Consequences of the mitochondrial
dynamics changes characteristic of AD and PD (in-
cluding fragmentation, fusion, mitochondrial biogen-
esis, and mitophagy)  [47, 48] also extend to vascular
cells. For example, in the brain microvascular endo-
thelial cells of mice with AD induced by introduc-
tion of amyloid-β peptides into the hippocampus, in-
creased mitochondrial fragmentation and autophagy
levels were observed, as evidenced by the expression
of the Drp1 and LC3b proteins  [49].
Mitochondrial dysfunction could be associated
with oxidative [50,  51] and reductive stress  [52,  53],
which are manifested as increased production of ROS
by mitochondria and decreased NAD
+
/NADH ratio, re-
spectively. However, the data on the prevalence of ox-
idative or reductive stress in neurodegeneration are
quite contradictory: in the transgenic mouse model
of AD, decrease in the NADH level in the neurons
was noted  [54], and exogenous administration of
NAD
+
to maintain normal redox balance was asso-
ciated with improved cognitive processes in AD and
slowed disease progression  [55]. For PD, disruption
in the NAD
+
/NADH ratio is also characteristic, and its
pharmacological restoration is considered neuropro-
tective  [56]. Changes in the NAD
+
and NADH levels,
in turn, could be associated with the impaired elec-
tron transport chain (ETC) function and could lead
to the changes in mitochondrial membrane potential.
Indeed, mitochondrial dysfunction in neurodegenera-
tion could also be manifested as membrane depolar-
ization, which could exacerbate oxidative stress  [57]
and lead to apoptosis [58]. Although it has been noted
that mitochondrial depolarization is not necessary for
apoptosis in the neurons  [59]. In general, changes in
the NAD
+
and NADH ratio in the cells could serve
as indicators of metabolic distress in the brain tissue
during aging and neurodegeneration  [60].
Using vascular organoids produced from the
iPSCs derived from the healthy donor, as well as from
the AD and PD patients, we were able to register signs
of metabolic disorders in neurodegeneration: a trend
toward disruption of the NAD
+
and NADH balance in
the cell culture medium associated with the reduced
expression of the Cx43 protein, reduced expression of
c-Myc at the transcript level, and increased produc-
tion of ROS by mitochondria.
METABOLIC STRESS IN VASCULAR ORGANOIDS 1001
BIOCHEMISTRY (MOSCOW) Vol. 91 No. 6 2026
It is known that the Cx43 hemichannels are re-
sponsible for transmembrane transport of NAD
+
[61],
which could explain the increased level of extracellu-
lar NAD
+
relative to NADH in the vascular organoids
produced from the cells derived from AD patients.
Thus, the trend toward change in the NAD
+
/NADH
balance in the conditioned medium could indicate re-
dox stress in the endothelial cells within the vascular
organoids produced from the cells derived from the
AD patient, but not from the PD patient. At the same
time, increased expression of Cx43 could be a sign
of metabolic adaptation of the cells to stress, since
their expression increases with suppression of cell
metabolism.
A significant regulator of metabolism is the
transcription factor c-Myc, which regulates mito-
chondrial biogenesis, expression of the nuclear-en-
coded mitochondrial genes  [62], and mitochondrial
dynamics [63], and is also involved in the regula-
tion of metabolic processes, including glycolysis and
oxidative phosphorylation  [64]. In addition, c-Myc
mediates endothelial cell proliferation  [65]. In this
study, we observed a statistically significant decrease
in the relative expression of the MYC gene in the
vascular organoids produced from the cells derived
from the PD patient compared to cells of the healthy
donor and the AD patient, which could indicate re-
duced mitochondrial biogenesis and mitochondrial
dysfunction. Interestingly, suppression of the c-Myc
expression is associated with the development of a
state of metabolic vulnerability in which cells resort
to compensatory mechanisms; however, with further
stress exposures, a full-fledged metabolic crisis could
occur, leading to the cell death  [66]. It is also known
that the increased expression of c-Myc is associated
with the increased NAD
+
levels and activation of the
NAD
+
-dependent enzyme SIRT1, which participates
in mitophagy and reduces the degree of cellular ag-
ing  [67]. The observed decrease in the c-Myc mRNA
expression, as well as the trend toward decrease in
the NAD
+
/NADH ratio, could serve as a prompt for
researchers to study the mechanisms of this imbal-
ance and involvement of the enzymes such as PARP1,
CD38, SIRT1, etc., in it further and in more detail.
In the endothelial cells that are part of vascu-
lar organoids produced from the cells derived from
AD and PD patients, a decrease in mitochondrial
membrane potential was detected, which is consis-
tent with the expected mitochondrial disorders in
these pathologies and is confirmed by the decrease
in the red/green fluorescence ratio of JC-1. However,
no statistically significant changes were found using
TMRE as a probe of mitochondrial membrane poten-
tial, which could be due to the different sensitivity
and dependence of TMRE fluorescence on the mito-
chondrial mass and dye accumulation. It should be
noted that the used imaging conditions do not allow
resolving individual mitochondria and assessing sub-
cellular localization of the fluorescent probes. In this
work, the main focus was on measuring the integral
fluorescent signal at the level of organoids. Methods
with higher spatial resolution (e.g., confocal microsco-
py) could be used in the future to clarify intracellular
localization of the signals.
At the same time, vascular organoids produced
from the cells derived from AD and PD patients
showed a significant increase in the mitochondri-
al superoxide anion levels, as evidenced by the in-
creased fluorescence of the MitoSOX probe. This in-
dicates increase in the ROS levels in mitochondria,
which could lead to their damage and corresponding
damage to metabolic pathways. These data are con-
sistent with the hypothesis suggesting that oxidative
stress is associated with mitochondrial dysfunction, as
well as with the literature data: in the animal mod-
els of AD and in the samples from the patients, the
increased level of mitochondrial superoxide was ob-
served, which disrupted functioning of the ETC in the
brain microvascular endothelial cells  [68]. It could be
assumed that for further modeling of mitochondrial
dysfunction in the vascular organoids, pharmacologi-
cal induction of stress or development of the methods
for “unifying” cellular composition of the organoids is
likely necessary, since it is known that organoids of-
ten contain immature cells  [69], which may not fully
correspond to the cellular composition of aging tissue
and its metabolic activity.
A limitation of this study is the use of only one
donor per group. This does not allow assessment of
interindividual variability or population range. At the
same time, such a design enables controlled compar-
ison while minimizing the influence of confounding
factors. The observed differences between groups
warrant attention and require replication on inde-
pendent cohorts with a larger number of donors.
CONCLUSION
Vascular organoids derived from iPSCs represent
a promising patient-specific model for studying vas-
cular pathology in various diseases, including neu-
rodegenerative diseases and aging. In the vascular
organoids derived from iPSCs of the patients with
neurodegeneration, signs of metabolic stress could
include decreased expression of the MYC gene, ex-
cessive production of reactive oxygen species by
mitochondria, and changes in mitochondrial poten-
tial. The obtained results could serve as a basis for
further research into the role of vascular pathology
in the pathogenesis of Alzheimers and Parkinson’s
diseases.
BLAGOVA et al.1002
BIOCHEMISTRY (MOSCOW) Vol. 91 No. 6 2026
Abbreviations
AD Alzheimers disease
BBB blood–brain barrier
Cx43 connexin 43
iPSC induced pluripotent stem cells
PD Parkinson’s disease
ROS reactive oxygen species
Acknowledgments
The authors express their gratitude to A.  S.  Minin (In-
stitute of Physics and Materials Science, Ural Branch
of the Russian Academy of Sciences) for providing
microwell stamps for spheroid production.
Contributions
A.  V.  Blagova, A.  Satish, E.  S.  Perepelitsa, D.  A.  Lifan-
ov, V.  I.  Zhdankina, and A.  A.  Kopylova – conducting
experiments; A.  V.  Blagova – statistical data analysis;
E.  S.  Perepelitsa and P.  V.  Guk – writing text of the
article; E.  S.  Perepelitsa and A.  V.  Blagova – planning
experiments; A.  B.  Salmina – editing text of the arti-
cle; A.  B.  Salmina and S.  N.  Illarioshkin – conceptual-
ization and administration of the project.
Funding
The work was financially supported by the grant
from the Ministry of Science and Higher Education
of the Russian Federation for implementation of the
large-scale scientific projects in the priority areas
of scientific and technological development (project
no. 075-15-2024-638).
Ethics approval and consent to participate
This article does not describe any studies involving
humans or the use of animals as subjects performed
by the authors. The study was approved by the local
ethics committee of the Federal State Budgetary Sci-
entific Institution “Russian Center of Neurology and
Neurosciences” (protocol no. 8-2/24 dated Septem-
ber16, 2024). Description of cell lines produced from
human cells obtained with their consent is presented
in previous papers, where these cell lines were first
introduced.
Conflict of interest
The authors of this work declare that they have no
conflicts of interest.
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